CDS

Accession Number TCMCG051C27272
gbkey CDS
Protein Id XP_024464752.1
Location join(1096105..1096917,1097673..1097789,1098408..1098509,1098602..1098718,1106104..1106334,1106418..1106512,1107144..1107231,1107988..1108119,1109399..1109511,1110250..1110351,1110437..1110498,1110683..1110754,1110856..1110929,1111010..1111066,1111170..1111247,1111689..1111766,1111870..1111941)
Gene LOC7463320
GeneID 7463320
Organism Populus trichocarpa

Protein

Length 800aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024608984.1
Definition DNA ligase 1 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA ligase
KEGG_TC -
KEGG_Module -
KEGG_Reaction R00381        [VIEW IN KEGG]
R00382        [VIEW IN KEGG]
R10822        [VIEW IN KEGG]
R10823        [VIEW IN KEGG]
KEGG_rclass RC00005        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03032        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10747        [VIEW IN KEGG]
EC 6.5.1.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
6.5.1.6        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
6.5.1.7        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03030        [VIEW IN KEGG]
ko03410        [VIEW IN KEGG]
ko03420        [VIEW IN KEGG]
ko03430        [VIEW IN KEGG]
map03030        [VIEW IN KEGG]
map03410        [VIEW IN KEGG]
map03420        [VIEW IN KEGG]
map03430        [VIEW IN KEGG]
GOs GO:0000012        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003909        [VIEW IN EMBL-EBI]
GO:0003910        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005739        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006260        [VIEW IN EMBL-EBI]
GO:0006261        [VIEW IN EMBL-EBI]
GO:0006266        [VIEW IN EMBL-EBI]
GO:0006271        [VIEW IN EMBL-EBI]
GO:0006273        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006304        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016886        [VIEW IN EMBL-EBI]
GO:0022616        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0035510        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044728        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051103        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070988        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080111        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCTCAGGCTCCGTCCATGCGTCTCTATACGCTCCATTTACTCCACGCGCCACTCCAAGCTTCTCCCTCCTCTCATTCCCTCTCTCTTCTTCTCTAAATCCCCATCATTTCTAAAAACCCACACTCTCTCTCTAAACCCTAATTCCACAATGTCCTCCTCTCGCCCCTCCGCCTTCGATGCTCTCATGTCCAACGCACGTGCCGCCGCCTCCGCTAAGAAAAAAACCCAACCCCAACCCCAATTAAAACCCAGCTCCCCCAAAAAACGCAAAACCCTAGACCATCCTCAAAACCCTGATAAAACCCTCAATTCCGTACAAAATCCCCAAACTGATGAATCTAAAAAGCTAATTAACACTCCAGATTCATCGAATGAGCCTAAATCAGAACCAAATTCTAGGTCTGATAGCTTATTAAAAGTCAATGAATCGAATAAACTGAGAGTTGAGGATAAAAATACGGAGTTGAAGAGCAAGATTGTGTTGTTAAAGAAGAAAGCTGGGGATTTTAAGCCGGAGATGGTGGCTAATTGGGAGAAAGGAGAGAGGGTTCCGTTTATATTTGTTTCTTTGGCTTTTGATTTGATAGCGAACGAGACAGGGAGGATTGTGATTACTGATATTGTTTGTAATATGTTGAGGACTGTAATGGATACTACTCCGGAGGATTTGGTGGCTGTGGTTTATTTGTTAGCTAATAAGGTTGCCCCTGCGCATGAGGGAGTGGAACTTGGGATTGGGGAAGCTTTGATTATTAAGGCGCTGGCGGAGGCGTGTGGGAGGAAAGAGAAGGAGGTTAAGAAGCAGTATAAGGACTTGGGAGATTTGGGCCTTGTTGCAAAAGCAAGTCGGTCATCCCAATCTATGATGCGCAAGCCTGATCCATTAACAATTACTAAAGTTTTCAACACATTTCAACAGATTGCTAAGGAATCCGGGAAGGATAGTCAAGACAAGAAAAAGAACCATATCAAGGCACTTCTTGTTGCAGCCACAGACTGCGAGCCTCTGTATCTAATTCGTCTGCTTCAGACAAAGTTGAGAATTGGATTGGCAGAACAGACTCTTTTGGCTGCCCTGGGACAAGCTGCTGTATATACTGAAGAGCATTCTACTCCTCCTCCACACATTCAGTCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTTTACTCTGTGCTTCCTGTCTATGATAAAATAGTCCCTGCTCTTCTTAGTGATGGCGTATGGAATCTTCCCAAGACATGCAGCTTCACACCTGGTGTTCCAGTTGGACCTATGCTGGCAAAACCAACCAAAGGGGTTTCTGAGATAGTAACTAAATTTCAGGATATGGAATTCTCCTGTGAATACAAGTATGATGGAGAACGTGCCCAGATACATTACTTGGAGAATGGTTCGGTTGAGATATATAGTCGAAATTCTGAGCGAAATACTGGAAAATTTCCTGATGTTGTTGCTGTAATTTCCCGATTAAAGAGGCCCTCAGCAAGCTCATTTATTCTGGATTGTGAACTAGTTGCGTATGATAGAGAAAAAAAGAAAATTCTCCCCTTTCAGATCCTCAGCACCCGGGCCCGAAAAAATGTGGTGATGAGTGATATCAAGGTTAATGTTTGCATATATGCCTTTGACATGTTGTATCTTAATGACCAACCACTTATTCAGAAAGAACTGAAAGTTCGTAGAGAGCATCTTTACAGTTCATTCGAGGAAGAACCTGGATTTTTTCAGTTTGCAACTGCAATAACATCAAATGATCTTGAAGAGATACAAAAATTCCTCGACACTGCTGTTGATGCCAGTTGTGAGGGTTTAATCATCAAAACAATGAATAAGGATGCTACATATGAACCTTCAAGGCGATCACATAACTGGCTGAAATTGAAGAAAGATTATATGGAAAGTATTGGAGACTCACTAGATCTAGTGCCTATTGGTGCTTTCCATGGTCGTGGAAAACGTACAGGTGTCTATGGTGCTTTTCTCCTTGCTTGTTATAATAGCAACAACGAAGAATTCCAGAGCATATGTAAAATAGGCACTGGATTTTCTGAACAAGTGCTTGAGGAACGTTCTGCTAGTCTCCGTTCACAAGTGATTCCCAAACCAAAGTCATACTATAGATTTGGAGATACTATTAAACCAGATGTGTGGTTTGAACCCAAGGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACTATTAGCCCTGTTCATCGTGCTGCAATTGGTGAAGTTGATCCTAACAAGGGAATTTCACTAAGATTTCCACGTCTTGTTCGAGTTCGAGAAGACAAGTCTCCAGAGCAAGCCTCATCATCAGAGCAGGTTGCTGAGATGTATAATGCCCAAAAGCATAATCATCAAAACAATCAAGATGACAATGATGATGATGATTGA
Protein:  
MLRLRPCVSIRSIYSTRHSKLLPPLIPSLFFSKSPSFLKTHTLSLNPNSTMSSSRPSAFDALMSNARAAASAKKKTQPQPQLKPSSPKKRKTLDHPQNPDKTLNSVQNPQTDESKKLINTPDSSNEPKSEPNSRSDSLLKVNESNKLRVEDKNTELKSKIVLLKKKAGDFKPEMVANWEKGERVPFIFVSLAFDLIANETGRIVITDIVCNMLRTVMDTTPEDLVAVVYLLANKVAPAHEGVELGIGEALIIKALAEACGRKEKEVKKQYKDLGDLGLVAKASRSSQSMMRKPDPLTITKVFNTFQQIAKESGKDSQDKKKNHIKALLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYTEEHSTPPPHIQSPLEEAAKIVKQVYSVLPVYDKIVPALLSDGVWNLPKTCSFTPGVPVGPMLAKPTKGVSEIVTKFQDMEFSCEYKYDGERAQIHYLENGSVEIYSRNSERNTGKFPDVVAVISRLKRPSASSFILDCELVAYDREKKKILPFQILSTRARKNVVMSDIKVNVCIYAFDMLYLNDQPLIQKELKVRREHLYSSFEEEPGFFQFATAITSNDLEEIQKFLDTAVDASCEGLIIKTMNKDATYEPSRRSHNWLKLKKDYMESIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYNSNNEEFQSICKIGTGFSEQVLEERSASLRSQVIPKPKSYYRFGDTIKPDVWFEPKEVWEVKAADLTISPVHRAAIGEVDPNKGISLRFPRLVRVREDKSPEQASSSEQVAEMYNAQKHNHQNNQDDNDDDD